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Enter a gene, cCRE, variant or locus
  • Human
    • cCREs by Class
    • cCREs by Cell and Tissue Type
    • cCRE-Gene Links
    • Functional Characterization
  • Mouse
    • cCREs by Class
    • cCREs by Cell and Tissue Type
    • Functional Characterization
  • Other
    • Orthologous cCREs
Human (GRCh38/hg38)
Human (GRCh38/hg38)

2,348,854 cCREs • 1,888 cell types

Please cite our latest publication when using downloaded data: Moore...Weng (2026) Nature

cCREs by Class (.bed)

Promoter-like (PLS) (47,532)

2.6 MB

All Candidate Enhancers (pELS & dELS) (1,718,669)

94.4 MB

Proximal enhancer-like (pELS) (249,464)

13.7 MB

Distal enhancer-like (dELS) (1,469,205)

80.7 MB

Chromatin Accessible with CTCF (CA-CTCF) (126,034)

7.3 MB

Chromatin Accessible with H3K4me3 (CA-H3K4me3) (79,246)

4.8 MB

Chromatin Accessible with TF (CA-TF) (26,102)

1.5 MB

Chromatin Accessible Only (CA) (245,985)

13.0 MB

TF Only (TF) (105,286)

5.6 MB

CTCF-Bound cCREs (948,642)

63.0 MB

Silencer Sets (.tar.gz)

14.3 MB (unzipped)

MAFF/MAFK Dynamic Enhancers (.tar.gz)

827 KB (unzipped)
cCREs in Other Assemblies

GRCh37/hg19 (Lifted down from GRCh38/hg38)

128.8 MB
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Search Candidate Regulatory Elements by ENCODE

Copyright © Weng Lab, Moore Lab 2026.

How to Cite the ENCODE Encyclopedia, the Registry of cCREs, and SCREEN:
Moore...Weng (2026) Nature

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SCREENWeng LabMoore LabENCODE ConsortiumUMass Chan Medical School
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